Standley, Daron

Profile

Prof. Standley received his PhD in Chemistry from Columbia University in 1998. He then joined Schrodinger, Inc. where he worked as a scientific software developer for five years. In 2003 he moved to the Institute for Protein Research, Osaka University as a Senior Scientist. He joined the Immunology Frontier Research Institute (IFReC) as a Principal Investigator in 2008 and, after a two-year cross-appointment at Kyoto University’s Institute for Virus Research, became a Professor full time at the Research Institute for Microbial Diseases in 2016.

Publication

  • (1) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Katoh, K., et al., Mol Biol Evol (2013) 30(4) 772-80
  • (2) Integrated sequence and structural alignment using MAFFT and DASH. Rozewicki, J., et al., (in prep) https://sysimm.org/dash/
  • (3) Repertoire Builder: High-throughput structural modeling of B and T cell receptors. Schritt, D., et al., (in prep) https://sysimm.org/rep_builder/
  • (4) Functional clustering of B cell receptors using sequence and structural features. Xu, Z., et al., (in prep) https://sysimm.org/interclone/
  • (5) Structural modeling of lymphocyte receptors and their antigens. Li, S., et al., Methods Mol Biol (2019) In press
  • (6) Regnase-1 and Roquin Regulate a Common Element in Inflammatory mRNAs by Spatiotemporally Distinct Mechanisms. Mino, T., et al., Cell (2015)161, 1058-1073

Lab

AKIRA, Shizuo

Division of Host Defense

Department of Host Defense

Aoshi, Taiki

Endowed Chair

Department of Cellular Immunology

Arase, Hisashi

Division of Host Defense

Department of Immunochemistry

Ebina, Hirotaka

BIKEN Innovative Vaccine Research Alliance Laboratories

Virus Vaccine Group

Hamada, Shigeyuki

Research Collaboration Center for Infectious Diseases

Section of Bacterial Drug Resistance Research

Hara, Eiji

Division of Cellular and Molecular Biology

Department of Molecular Microbiology

Horiguchi, Yasuhiko

Division of Infectious Disease

Department of Molecular Bacteriology

Horii, Toshihiro

Endowed Chair

Department of Malaria Vaccine Development

Iida, Tetsuya

Research Center for Infectious Disease Control

Department of Bacterial Infections

Ikawa, Masahito

Genome Information Research Center

Department of Experimental Genome Research

Ishitani, Tohru

Division of Cellular and Molecular Biology

Department of Homeostatic regulation

Iwanaga, Shiroh

Research Center for Infectious Disease Control

Department of Molecular Protozoology

Iwasaki, Masaharu

International Research Center for Infectious Diseases

Laboratory of Emerging Viral Diseases

KAMITANI, Wataru

International Research Center for Infectious Diseases

Laboratory of Clinical Research on Infectious Diseases

Kinoshita, Taroh

Endowed Chair

Yabumoto Department of Intractable Disease Research

Kobayashi, Takeshi

Research Center for Infectious Disease Control

Department of Virology

Maeda, Yusuke

International Research Center for Infectious Diseases

Laboratory of Viral Dynamism Research

Matsuura, Yoshiharu

Division of Infectious Disease

Department of Molecular Virology

Miki, Hiroaki

Division of Cellular and Molecular Biology

Department of Cellular Regulation

Mimuro, Hitomi

Division of Infectious Disease

Department of Infection Microbiology

Murakami, Yoshiko

Endowed Chair

Yabumoto Department of Intractable Disease Research

Nakamura, Shota

International Research Center for Infectious Diseases

Laboratory of Pathogen Detection and Identification

Okada, Masato

Division of Cellular and Molecular Biology

Department of Oncogene Research

Okamoto, Toru

Division of Infectious Disease

Institute for Advanced Co-Creation Studies

Shioda, Tatsuo

Division of Infectious Disease

Department of Viral Infections

Suzuki, Kazuhiro

Division of Host Defense

Department of Immune Response Dynamics

Takakura, Nobuyuki

Division of Cellular and Molecular Biology

Department of Signal Transduction

Tatsumi, Masashi

Research Collaboration Center for Infectious Diseases

Section of Viral Infections

Watanabe, Tokiko

Division of Infectious Disease

Yamamoto, Masahiro

Division of Infectious Disease

Department of Immunoparasitology

Yamasaki, Sho

Division of Host Defense

Department of Molecular Immunology

Yoshioka, Yasuo

BIKEN Innovative Vaccine Research Alliance Laboratories

Vaccine Creation Group