Department of Genome Informatics

Staff:

Professor

Daron M. Standley, Ph.D.

Associate Professor

Kazutaka Katoh, Ph.D.

Assistant Professor

Li Songling, Ph.D.

Van Eerden Floris Jan, Ph.D

Specially Appointed Researcher

John Rozewicki

Jan Wilamowski

Subjects:

1. Systems Immunology
2. Structural Bioinformatics
3. Computational Immunology
4. Systems Biology

Papers published in 2017

1. Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus.

   Shuhei Sakakibara, Takao Arimori, Kazuo Yamashita, Hideyuki Jinzai, Daisuke Motooka, Shota Nakamura, Songling Li, Kazuya Takeda, Jun Katayama, Marwa Ali El Hussien, Masashi Narazaki, Toshio Tanaka, Daron M Standley, Junichi Takagi and Hitoshi Kikutani

   Sci Rep, 7 (1), 16428, 2017.
2. Arid5a stabilizes OX40 mRNA in murine CD4

   Hamza Hanieh, Kazuya Masuda, Hozaifa Metwally, Jaya P Chalise, Maged Mohamed, Kishan K Nyati, Daron M Standley, Songling Li, Mitsuru Higa, Mohammad M Zaman and Tadamitsu Kishimoto

   Eur J Immunol, , , 2017.
3. Structural basis for the assembly of the Ragulator-Rag GTPase complex.

   Ryo Yonehara, Shigeyuki Nada, Tomokazu Nakai, Masahiro Nakai, Ayaka Kitamura, Akira Ogawa, Hirokazu Nakatsumi, Keiichi I Nakayama, Songling Li, Daron M Standley, Eiki Yamashita, Atsushi Nakagawa and Masato Okada

   Nat Commun, 8 (1), 1625, 2017.
4. Characterization of SPP inhibitors suppressing propagation of HCV and protozoa.

   Junki Hirano, Toru Okamoto, Yukari Sugiyama, Tatsuya Suzuki, Shinji Kusakabe, Makoto Tokunaga, Takasuke Fukuhara, Miwa Sasai, Takahiro Tougan, Yasue Matsunaga, Kazuo Yamashita, Yusuke Sakai, Masahiro Yamamoto, Toshihiro Horii, Daron M Standley, Kohji Moriishi, Kyoji Moriya, Kazuhiko Koike and Yoshiharu Matsuura

   Proc Natl Acad Sci U S A, 114 (50), E10782-E10791, 2017.
5. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization.

   Kazutaka Katoh, John Rozewicki and Kazunori D Yamada

   Brief Bioinform, , , 2017.
6. TLR4-induced NF-κB and MAPK signaling regulate the IL-6 mRNA stabilizing protein Arid5a.

   Kishan K Nyati, Kazuya Masuda, Mohammad Mahabub-Uz Zaman, Praveen K Dubey, David Millrine, Jaya P Chalise, Mitsuru Higa, Songling Li, Daron M Standley, Kazunobu Saito, Hamza Hanieh and Tadamitsu Kishimoto

   Nucleic Acids Res, 45 (5), 2687-2703, 2017.
7. Mapping circulating serum miRNAs to their immune-related target mRNAs.

   Bakhtiyor Nosirov, Joël Billaud, Alexis Vandenbon, Diego Diez, Edward Wijaya, Ken J Ishii, Shunsuke Teraguchi and Daron M Standley

   Adv Appl Bioinform Chem, 10, 1-9, 2017.

Link

Department of Genome Informatics

Research Institute for Microbial Diseases, Osaka University