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Department of Genome Informatics

GENOME INFORMATION RESEARCH CENTER:

Department of Genome Informatics

Staff:

Professor
Teruo Yasunaga, Ph.D.
Professor(SUP)
Tatsuya Takagi, Ph.D.
Associate Professor
Naohisa Goto, Ph.D.
Shota Nakamura, Ph.D.
Associate Professor(SUP)
Norihito Kawashita, Ph.D.
Graduate Student
Kiyoshi Yamazaki
Ryuuta Seto
Yoshitaka Onishi

Subjects:

  1. Bioinformatics and molecular evolution analysis of genes and genomes.
  2. Analysis of protein 3-D structure information for drug discovery and design.
  3. Genome sequencing of disease-causing organisms in collaboration with other laboratories.
  4. Development of genome information analysis software, including Next-Generation Sequencing data management and analysis.

Published Papers in 2013

  1. Mayo Yasugi, Ritsuko Kubota-Koketsu, Akifumi Yamashita, Norihito Kawashita, Anariwa Du, Ryo Misaki, Motoki Kuhara, Naphatsawan Boonsathorn, Kazuhito Fujiyama, Yoshinobu Okuno, Takaaki Nakaya and Kazuyoshi Ikuta
    PLoS One, 8 (10), e77892, 2013.
  2. Shoji Ideno, Kaoru Sakai, Mikihiro Yunoki, Ritsuko Kubota-Koketsu, Yuji Inoue, Shota Nakamura, Teruo Yasunaga, Yoshinobu Okuno and Kazuyoshi Ikuta
    Biologics, 7, 233-241, 2013.
  3. Sabar Pambudi, Norihito Kawashita, Supranee Phanthanawiboon, Magot Diata Omokoko, Promsin Masrinoul, Akifumi Yamashita, Kriengsak Limkittikul, Teruo Yasunaga, Tatsuya Takagi, Kazuyoshi Ikuta and Takeshi Kurosu
    Biochem Biophys Res Commun, 440 (3), 393-398, 2013.
  4. Masafumi Seki, Kazuyoshi Gotoh, Shota Nakamura, Yukihiro Akeda, Tadashi Yoshii, Shinichi Miyaguchi, Hidenori Inohara, Toshihiro Horii, Kazunori Oishi, Tetsuya Iida and Kazunori Tomono
    J Med Microbiol, 62 (Pt 5), 801-803, 2013.
  5. Hideyuki Yamamoto, Daisuke Okuzaki, Kyosuke Yamanishi, Yunfeng Xu, Yuko Watanabe, Momoko Yoshida, Akifumi Yamashita, Naohisa Goto, Seiji Nishiguchi, Kazunori Shimada, Hiroshi Nojima, Teruo Yasunaga, Haruki Okamura, Hisato Matsunaga and Hiromichi Yamanishi
    Int J Mol Med, 31 (5), 1057-1065, 2013.
  6. Gizele D Garcia, Gustavo B Gregoracci, Eidy de O Santos, Pedro M Meirelles, Genivaldo G Z Silva, Rob Edwards, Tomoo Sawabe, Kazuyoshi Gotoh, Shota Nakamura, Tetsuya Iida, Rodrigo L de Moura and Fabiano L Thompson
    Microb Ecol, 65 (4), 1076-1086, 2013.
  7. Yuji Inoue, Ritsuko Kubota-Koketsu, Akifumi Yamashita, Mitsuhiro Nishimura, Shoji Ideno, Ken-ichiro Ono, Yoshinobu Okuno and Kazuyoshi Ikuta
    J Biol Chem, 288 (7), 4981-4990, 2013.
  8. Shirajum Monira, Shota Nakamura, Kazuyoshi Gotoh, Kaori Izutsu, Haruo Watanabe, Nur Haque Alam, Takaaki Nakaya, Toshihiro Horii, Sk Imran Ali, Tetsuya Iida and Munirul Alam
    Gut Pathog, 5 (1), 1, 2013.
  9. Yu-Shi Tian, Chris Verathamjamras, Norihito Kawashita, Kousuke Okamoto, Teruo Yasunaga, Kazuyoshi Ikuta, Masanori Kameoka and Tatsuya Takagi
    J Mol Model, 19 (1), 465-475, 2013.
  10. Mayo Yasugi, Ritsuko Kubota-Koketsu, Akifumi Yamashita, Norihito Kawashita, Anariwa Du, Tadahiro Sasaki, Mitsuhiro Nishimura, Ryo Misaki, Motoki Kuhara, Naphatsawan Boonsathorn, Kazuhito Fujiyama, Yoshinobu Okuno, Takaaki Nakaya and Kazuyoshi Ikuta
    PLoS Pathog, 9 (2), e1003150, 2013.
  11. Toshiaki Katayama, Mark D Wilkinson, Gos Micklem, Shuichi Kawashima, Atsuko Yamaguchi, Mitsuteru Nakao, Yasunori Yamamoto, Shinobu Okamoto, Kenta Oouchida, Hong-Woo Chun, Jan Aerts, Hammad Afzal, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Francois Belleau, Jerven Bolleman, Raoul Jp Bonnal, Brad Chapman, Peter Ja Cock, Tore Eriksson, Paul Mk Gordon, Naohisa Goto, Kazuhiro Hayashi, Heiko Horn, Ryosuke Ishiwata, Eli Kaminuma, Arek Kasprzyk, Hideya Kawaji, Nobuhiro Kido, Young Joo Kim, Akira R Kinjo, Fumikazu Konishi, Kyung-Hoon Kwon, Alberto Labarga, Anna-Lena Lamprecht, Yu Lin, Pierre Lindenbaum, Luke McCarthy, Hideyuki Morita, Katsuhiko Murakami, Koji Nagao, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Pjotr Prins, Taro L Saito, Matthias Samwald, Venkata P Satagopam, Yasumasa Shigemoto, Richard Smith, Andrea Splendiani, Hideaki Sugawara, James Taylor, Rutger A Vos, David Withers, Chisato Yamasaki, Christian M Zmasek, Shoko Kawamoto, Kosaku Okubo, Kiyoshi Asai and Toshihisa Takagi
    J Biomed Semantics, 4 (1), 6, 2013.
  12. Megumi Tsukamoto, Asuka Hatabu, Yoshitake Takahashi, Hiroshi Matsuda, Kousuke Okamoto, Noriyuki Yamashita and Tatsuya Takagi
    Biol Pharm Bull, 36 (3), 417-424, 2013.
  13. Kunihiro Kaihatsu, Shinjiro Sawada, Shota Nakamura, Takaaki Nakaya, Teruo Yasunaga and Nobuo Kato
    PLoS One, 8 (5), e64017, 2013.
  14. Yusuke Shiromoto, Satomi Kuramochi-Miyagawa, Akito Daiba, Shinichiro Chuma, Ami Katanaya, Akiko Katsumata, Ken Nishimura, Manami Ohtaka, Mahito Nakanishi, Toshinobu Nakamura, Koichi Yoshinaga, Noriko Asada, Shota Nakamura, Teruo Yasunaga, Kanako Kojima-Kita, Daisuke Itou, Tohru Kimura and Toru Nakano
    RNA, 19 (6), 803-810, 2013.
  15. Masayuki Morita, Keiji Kuba, Akihiko Ichikawa, Mizuho Nakayama, Jun Katahira, Ryo Iwamoto, Tokiko Watanebe, Saori Sakabe, Tomo Daidoji, Shota Nakamura, Ayumi Kadowaki, Takayo Ohto, Hiroki Nakanishi, Ryo Taguchi, Takaaki Nakaya, Makoto Murakami, Yoshihiro Yoneda, Hiroyuki Arai, Yoshihiro Kawaoka, Josef M Penninger, Makoto Arita and Yumiko Imai
    Cell, 153 (1), 112-125, 2013.
  16. Shirakuni Yuko, Okamoto Kousuke, Uejima Etuko, Inui Shigeki, Takaharav Jun-ichi, Ohgaru Takanori, Yamasaki Hiroyuki, Tian Yushi, Kawashita Norihito, Inoue Ran, Yasunaga Teruo and Takagi Tatsuya
    Therapeutic Innovation & Regulatory Science, 47 (2), 235-241, 2013.

Link

http://www.biken.osaka-u.ac.jp/

Last modified:2014/03/27 16:13:04
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References:[Annual Reports 2013]